NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334985_0012459

Scaffold Ga0334985_0012459


Overview

Basic Information
Taxon OID3300034018 Open in IMG/M
Scaffold IDGa0334985_0012459 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME04Jul2014-rr0021
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6713
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F060868Metagenome / Metatranscriptome132Y
F105020Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0334985_0012459_6072_6341F060868AGGAGMANYTFKTPYVLEGPSGGHRLFYFAKLRKGITIVKSGSTYSQIRYAVDEDLNDYDVVYRGGYEHTVNDAAKAELIAANVGVTEANFTVQ
Ga0334985_0012459_6350_6712F105020AGTAGGMHSHISKVLEWGFSETHDFVATLWGCVLCDETSDKPFLAEEDIDIDHTECDEDCFGCKVKGLQLNAGDAARDVPDKKWNAELASYRKARESGIQPAGTTHAHVEQAYQASETLGKAYDAD
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