NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334985_0111898

Scaffold Ga0334985_0111898


Overview

Basic Information
Taxon OID3300034018 Open in IMG/M
Scaffold IDGa0334985_0111898 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME04Jul2014-rr0021
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1913
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Microgenomates group → Candidatus Gottesmanbacteria → Candidatus Gottesmanbacteria bacterium RIFCSPLOWO2_01_FULL_39_12b(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029104Metagenome189Y
F079973Metagenome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0334985_0111898_36_485F079973N/AMVNLETGQMRVKNHSAPEYCVSKYIGWSLELPPVEKANKQDIYIVVHKSSFSHKKIEFDEFLEPENNRYNQEEWEFLLSVIESRFTKQKEWAKVGIRVPSQYDDGTQVFKTEDEFRAFSFGRRAYFLYHLVRNYSFTHLIRRLNIGYTQ
Ga0334985_0111898_727_1185F029104N/AMKANFKEFLEKIDYKDPSEYDFDSDKTIDQNIKETLKNINKSSWCWTLFSCEGHNHEDKSKSLPYFVFVVKKKCIPVLLGMLFQTLDPRIDVKTELPLCNTNSINVSWGFTDDKYAIVNVHWWDNFLEDPEQHKKLLADFYEMSFKILEAKL
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