NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334998_0123661

Scaffold Ga0334998_0123661


Overview

Basic Information
Taxon OID3300034019 Open in IMG/M
Scaffold IDGa0334998_0123661 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Sep2014-rr0049
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1687
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018127Metagenome / Metatranscriptome236Y
F029017Metagenome / Metatranscriptome189Y
F102503Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0334998_0123661_1280_1546F029017GAGMDELGFVTWKLVQWVLWAGPFGVGAFLAAIAAAAFAAGYFFDPVALRLRRSKRTDNPMGNVKMDHIKHDILPDGTLGPGDPRGLEDPE
Ga0334998_0123661_80_289F102503GAGGMTERKNISQPKEVWAAWDRQAAAMDMTLSGLIFEAMNEHLGLFLTRKTKRRPESKPVARKRQKRNLGPG
Ga0334998_0123661_904_1278F018127GGAGMAKQKDNWIPWVIIGGLAFYVFSQQPKEGGDPKPAGVTAVVRSTIPSIRAAWKQVFLDAAAKIEDGTIANQEQWTKFIADNAGGKNREAMDKVYSAIDELKLPVTFAGREAEIARINKEIASAW
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