NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335002_0012879

Scaffold Ga0335002_0012879


Overview

Basic Information
Taxon OID3300034020 Open in IMG/M
Scaffold IDGa0335002_0012879 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2015-rr0055
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6272
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (92.31%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024291Metagenome / Metatranscriptome206Y
F047555Metagenome149Y
F091636Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0335002_0012879_2984_3472F047555GGCGGMSVTAQVRASVRARRLTQSGLTQSLEEHPVEFAVDAGDCTKVWSDQRTFGAVGYDEVNFATVGLSVVKLLCIKNLSTTNQIALSAGWTGSQFSVFRQDVTSWNFSPMINLGSLTLRGYPIREGGSMLLSCPNSAGFGTTVGGSILRIGGTSGQRYEIYVMGT
Ga0335002_0012879_5122_5559F091636AGGAGMIHAQNDKVVAALPAAVTASNETATMTIDTVGYDHASVTVMRASNAATTFASVLKVEESDDNSSYSNVTALVGGGTGGFSIPAVSATGSVSVVKLDVDTKARKRYLKVSMTPSTAVNVAMTARLSRGEVSPETASQAGVIGWVKG
Ga0335002_0012879_648_983F024291AGGAGGMAGVAAQGLTFTFAGSTLTVTSVQVNDTQDLIDGSHLGIAPNGKREYVGGFATDREVQIDYISQTILTAGTSGSLAITGPLSFSGNATLANSSIGGSVGALISGSATFRVA
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