NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335002_0058197

Scaffold Ga0335002_0058197


Overview

Basic Information
Taxon OID3300034020 Open in IMG/M
Scaffold IDGa0335002_0058197 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2015-rr0055
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2757
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019779Metagenome / Metatranscriptome227N
F038078Metagenome / Metatranscriptome166N

Sequences

Protein IDFamilyRBSSequence
Ga0335002_0058197_2142_2741F019779N/AMKDHPAIDFRPMDVEGEEDRFSETLDSPDIENEIECSGERCFTPPEDDWEIINRGSDFIIHGLETLDEQLDIIATRIDTENKIEEILKNIRKGFSIIDDIILYATTFSNEASKAKVEKFRGFISDLLDFAKTNITKTLVIVRKLRARSLLSLIPLTKDLIMEQKHIKKLVSSSNLEQVKELLKEYRRTIRRRVSRRYSI
Ga0335002_0058197_218_667F038078N/AMAAKGDKCTVRMKKSKRESIERFFSLINFIFFMSEEEDITLLRYLHEAKARVLANSEYWSLVDYIGMTIGRIFRCIDTINVEEKWDSKNNREWFHEMIKSMNTLKDLHPQWHLTKQDVDRYSTTCPCSQCSTREDREDTISSSISKLNI
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