NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335002_0060823

Scaffold Ga0335002_0060823


Overview

Basic Information
Taxon OID3300034020 Open in IMG/M
Scaffold IDGa0335002_0060823 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2015-rr0055
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2684
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023592Metagenome / Metatranscriptome209Y
F029049Metagenome / Metatranscriptome189Y
F066777Metagenome / Metatranscriptome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0335002_0060823_1029_1538F029049N/AMSSVVKVVLDRSQEITAHRVGLERTITRNAEVQDASNFGQAYKNWHELVWQESEGAAAEIAVANYFGDYGFVPAIDNGHDTADVGENIEVKWTKHTNGHLILQNRGPGRPNDVAILVTGFSPVYILLGWMPVHMAKVPKYKHPYQNNYWVPRSNLFEMQYLKRSNYGDV
Ga0335002_0060823_1526_1711F066777AGGAMSELTYIKDGLATTIHDNGEITIVAAKQCDECFKWQTSLGGFDVRDVSGEVVLWLCAQCR
Ga0335002_0060823_2501_2659F023592N/AMNSLDILIGLAACGMGFMFMVIGYSIGFKHGHGEGFVRGRAIAQALKDRELI
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