NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335002_0245736

Scaffold Ga0335002_0245736


Overview

Basic Information
Taxon OID3300034020 Open in IMG/M
Scaffold IDGa0335002_0245736 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2015-rr0055
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1078
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011064Metagenome / Metatranscriptome295N
F057098Metagenome / Metatranscriptome136N

Sequences

Protein IDFamilyRBSSequence
Ga0335002_0245736_133_549F057098N/AMALSLIQMSHKRINNEPGNEFVASQIVDDNFIRLLSEILRFILAWTIPLTLREIALHKYFKLDPVGYEHDKNLKIGLFDSPPVVDSIENRVSIRMGELMRQGENVLVSIPKPEDPNRAQTLVEERKKLESPSNWFIWE
Ga0335002_0245736_569_1078F011064N/AMARESVLDSFWQEFSAIEWTSDMSLGDLFDVSLWTHKLCASLCDLHMISQAPRISEYDMNTVAANILGYVFNIYRCKMDQLNINLEIDQHWVNYETQRDSEILKSIKRLQEILIANKIMTNEGSDRLRQSSTLCRYRADIQSDQDLGYELSCVLQFIAIKTQLTLRQLVF
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