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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300034021 Open in IMG/M |
| Scaffold ID | Ga0335004_0001879 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME01Oct2014-rr0057 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 15791 |
| Total Scaffold Genes | 31 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (29.03%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F028725 | Metagenome | 190 | Y |
| F061575 | Metagenome | 131 | Y |
| F080936 | Metagenome | 114 | Y |
| F094990 | Metagenome | 105 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0335004_0001879_12237_12860 | F094990 | N/A | MNSIAKITIPIEKLYQSINSPETLNAQRLTANIQPIESQNQYTAASNAIAQVNTAVKAIQDARKMVTGPLDAYKKELMRIESDATEPLQAFIASTKAEMLKYTAELNRKQQEEQKRIQEQSRSIADLTDQLADVSIQHSHIKGIRTIRRTRITGEVDWMKVLSVLFGSGMYKPEDLTQNLLKAMEKCGVTAISGIEIYEEQIQTITR |
| Ga0335004_0001879_14011_14655 | F080936 | N/A | MQQSNISTLSLLAICLFLLLLLMRTCGALGEAESNARYLDSLNNEYAVRIARDSSKMHSQGVQLAAAGTKLRALELREPEVVIRYQTRTKVVTQVELGETVYIDSFPHLRLPRTFHRPGKWLEIGGQISRAGRLQLDSIIIPVSYTVAIGDTLRKGFLSRKRDKVVRLGIDNPYVTVTRMNNIIVAEPPKKWYETRAFAFALGGITGFAIGRAK |
| Ga0335004_0001879_1571_1918 | F061575 | N/A | MSVCSPCFDSGISVAACNGGIQFGYVTPEESYTITITHNATKRMQTFIATSELDGTLMIEGAKIDALQGYTIRLDGCAKFTICEVEYDCISFSVVNKDIVTEEPAFVNLLECLEC |
| Ga0335004_0001879_544_1089 | F028725 | AGAAG | MVELFKHEGHTYYRFPKELNLPLERFSMSMSLMERISSGLSGSEMERILSGMEKALSAGLSNPKNAAVVAGYIHVIRERQDTVIHRDLLLNLAATWVVLDDEDPGVIDPTIHNKKLELFEAMCKEASHDFFTRLDIAPLMPLLTMSPQDFQILWEYNVEEQRKLTQALKHLNTHLDTGRK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |