NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335005_0001540

Scaffold Ga0335005_0001540


Overview

Basic Information
Taxon OID3300034022 Open in IMG/M
Scaffold IDGa0335005_0001540 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Apr2018-rr0058
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18090
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)25 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → actinobacterium acIB-AMD-7(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000821Metagenome / Metatranscriptome876Y
F018135Metagenome236Y
F086805Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0335005_0001540_121_282F000821GGAGMNEEYLAAKANLCLNQAEIDLKQEEIARAIKNLERANSALSRLFGLEGEADDN
Ga0335005_0001540_1948_2112F086805GAGMMNNLTPRGWLVLGIAIGLAIAGLWWVSGHIWYIEGEGYCIGTLLECDPAAFTR
Ga0335005_0001540_973_1131F018135AGGMTIERVKHSGAYVISEIAGEGSNAYLFTRSYYGYTLAQAKAQFKLAIEGEVK
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