NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335005_0017587

Scaffold Ga0335005_0017587


Overview

Basic Information
Taxon OID3300034022 Open in IMG/M
Scaffold IDGa0335005_0017587 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Apr2018-rr0058
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5042
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007203Metagenome / Metatranscriptome356Y
F047515Metagenome / Metatranscriptome149Y

Sequences

Protein IDFamilyRBSSequence
Ga0335005_0017587_2_574F047515N/AMNYEQLLGIVGGSNPKDASYQDIISGIQSQYAPQLGFLPTRSLLDTLGEQLPDQPRIAYGSLLQAQPRVLPTPMTPVASDGMASVDSGVINLGADTANTGLGGGQDLSGTLVYNNDFSNATGGTTGSTTDRGLFGTKVTGTDIANVAGTVAPIAALAGNSDLVKTAIALNLIGSAADIKTDQDVINLGTKI
Ga0335005_0017587_3939_4118F007203GGAMYVQMQGINLAPKVKELEKRIEMLENMVKELQLDKPRMGRPPKDKHGTERVNVDNPSRD
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