NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335005_0019959

Scaffold Ga0335005_0019959


Overview

Basic Information
Taxon OID3300034022 Open in IMG/M
Scaffold IDGa0335005_0019959 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Apr2018-rr0058
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4706
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (72.73%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000332Metagenome / Metatranscriptome1283Y
F005117Metagenome411Y
F048177Metagenome148Y

Sequences

Protein IDFamilyRBSSequence
Ga0335005_0019959_1398_1757F048177AGGAGMSNPVTDLKLVDNVFVKMHQFLNVGDTHQGHAHVFDHITLLAVGSVTMKHDGGEQDFTAPHLIVTPKGVVHQFIAKEPNTIFCCIHAIREGSDVASIASQDITPEQAFELMSQYPLTQT
Ga0335005_0019959_2143_2430F000332AGGMRWLILIIALALVSAVAKDGCYVRELYGIGYTVHDPTERHKQMLDWLTRNAKHCKAVDYLAIWNGLAEWAGTADTAELRGKVIQGLRDADEREKK
Ga0335005_0019959_2427_2666F005117GAGMKVSYDKWFPVVQPTATTQTDVFAKRVEKLDAERAVQVQIDSTVKKFHQYEYEIYEYRMKQITLNIEVGNLKREIDKLV

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