NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335005_0185781

Scaffold Ga0335005_0185781


Overview

Basic Information
Taxon OID3300034022 Open in IMG/M
Scaffold IDGa0335005_0185781 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Apr2018-rr0058
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1298
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: Euk_MAG)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015817Metagenome / Metatranscriptome252Y
F045744Metagenome152Y

Sequences

Protein IDFamilyRBSSequence
Ga0335005_0185781_2_238F045744N/AKGPFRYFFFEFSLLFGLFSNLFGLAFRELPNLSSKILSIATTAVTLPVLEFSIAISLALIVSSARLVALIGRVSVDSK
Ga0335005_0185781_408_1298F015817N/AEPAERELVTAEVAEAAKVTTVYELFCKGLKEDPELQWDRIVEDMHTRDPWEDLKGVKHEGIRRKSCLSLWECIDFHKLTVYSIDAAERQRFYMLCNLKKPTKSSIRAHVTQMETLNKYIGLLPTIKNSPQAVASTELGNVPFNETTLASIILNHLPVAWRTQYALTHTLVPESPRAILLDLENIEKLFVEKTNEAAQANKAKVATALKGASEHVPRKGKRAHGGKPDTGNPKKVRTAKYCKWCKAADGPFTTHNTDECRRFNKDGSQKDRLTKPFDSSKKPAWKKPMVGIPIRWLI
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