NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0335021_0000292

Scaffold Ga0335021_0000292


Overview

Basic Information
Taxon OID3300034023 Open in IMG/M
Scaffold IDGa0335021_0000292 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME21Oct2016-rr0090
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)36033
Total Scaffold Genes62 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)45 (72.58%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023253Metagenome211Y
F038004Metagenome / Metatranscriptome167Y
F079389Metagenome / Metatranscriptome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0335021_0000292_1605_1790F038004GGTGGMAIRLGATDTHIVLTALWDYRETLTNGIAPTPHIQARIASVDRLIASYRKSFFALDRLGL
Ga0335021_0000292_34618_34896F079389N/AMIQAAKDQGWHLSLTANHYGMHRSSIAAACERFGITLPMHPFSPQRVSPKSKVWIDIADGETKPKVKLSASPAAVERTLRRIQNEKRLQALS
Ga0335021_0000292_808_1026F023253GGAGGMMFWRKEPKTMPHRDIHAEAALGISNAASVLPPKRFMDLVYWAIMTNRQISVEDMDALANRLSRAAWERGRK
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.