NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335021_0001083

Scaffold Ga0335021_0001083


Overview

Basic Information
Taxon OID3300034023 Open in IMG/M
Scaffold IDGa0335021_0001083 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME21Oct2016-rr0090
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)21179
Total Scaffold Genes41 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)30 (73.17%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001396Metagenome / Metatranscriptome705Y
F054000Metagenome140Y

Sequences

Protein IDFamilyRBSSequence
Ga0335021_0001083_1043_1477F054000AGGAMAYNPAEYEARRRGYTQQYGASGAMNAYANFLARQRGTRGRQDMLRQYEEAQPRVVAGYSRRGLVGPNVKSGIFSRGLQTLAKQRARNLGDYDQEQLGEQRMYDLGEAQRLEAFKNQLADMESEKAQTIANAARQLYANRMGMI
Ga0335021_0001083_9315_9515F001396GGAMPEIWVPIVVAVITGPVVVVLSKLRKENSEQHAEGRELLEAIGIKVDKVGSKLDEHIGWHKGKEDK
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