NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335021_0021626

Scaffold Ga0335021_0021626


Overview

Basic Information
Taxon OID3300034023 Open in IMG/M
Scaffold IDGa0335021_0021626 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME21Oct2016-rr0090
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4168
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (18.18%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000785Metagenome / Metatranscriptome891Y
F011393Metagenome / Metatranscriptome291Y
F018718Metagenome / Metatranscriptome233Y

Sequences

Protein IDFamilyRBSSequence
Ga0335021_0021626_1144_1371F018718N/AMTIREFYVANYPSDDMGDGINPTATFAGLLNQLIVGGDVYEYLYVYDSIIRERLFERLAEELNVKYDYVYNLWLK
Ga0335021_0021626_421_729F011393N/AMGEQVAYNRCEHCNVELHENEAGEYYPVVNRMDKHTNIRGEYIPIGNRFQYPRNWGKKKGATILLETRIADKLKVLADTQLELSKLQACLDKVNEWDDTILN
Ga0335021_0021626_68_418F000785N/AMRVTNKRGMKFDCTKLMNWAQDLLGPSKCTAIAFTWDAEEESCGWYNWDETIWINLASCKRMITVQKTILHEWTHAQQTFRWYNHYNVKYGYKNNPYELEARENEKLVKRAYKKRK
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