NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334927_001841

Scaffold Ga0334927_001841


Overview

Basic Information
Taxon OID3300034024 Open in IMG/M
Scaffold IDGa0334927_001841 Open in IMG/M
Source Dataset NameBiocrust microbial communities from Mojave Desert, California, United States - 23HNC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7996
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Hypolithic Biocrust → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)34.3778Long. (o)-117.6098Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042710Metagenome157N
F083444Metagenome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0334927_001841_310_540F042710GGAGMAENSGENCERSQNFTASSARDCRYVDVLKARAEELGLDSDCVGDKRKRETWEAVLENHGEEKPVKPQFVPKPNQP
Ga0334927_001841_572_1123F083444GAGGMLNNMSEVFSLEEVALQDTYLLPEYGKKVIYFVTAMQGESKTFLYIGFTINLRRKFKSHHRKIEFEFLNRIGYQINISWIVLPNGIREKEGHVVQRCYIEAFEPKLNEDQNSIATVQAEELKKQFENWEQRRYEYLKKQIENWEQSGDDKDTIIKKIWEVCKQPFDDKQHLILPPYKPEKTAV
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