NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334927_001904

Scaffold Ga0334927_001904


Overview

Basic Information
Taxon OID3300034024 Open in IMG/M
Scaffold IDGa0334927_001904 Open in IMG/M
Source Dataset NameBiocrust microbial communities from Mojave Desert, California, United States - 23HNC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7826
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Microcoleaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Hypolithic Biocrust → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)34.3778Long. (o)-117.6098Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001042Metagenome / Metatranscriptome794Y
F042710Metagenome157N

Sequences

Protein IDFamilyRBSSequence
Ga0334927_001904_542_772F042710GGAGMSENSEENCERSQNFTASSARDCRYVDVLKTRAQELGLDSDCIGDKRKRETWEAVLENHGEEKPAKPRFVAKPNQP
Ga0334927_001904_6201_6578F001042GGAGMTFTDGSFCGRSQDLTCAEANDKIVIDKLLVNKLTELLITSIYSVHTSRRSEIFLTSLDMHLAKYSINNKNDTAHREFTEKSALLLESYQEDVPKSLGKAESCLGEAIDLINLIVSASEAGVNNE
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