NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334949_002914

Scaffold Ga0334949_002914


Overview

Basic Information
Taxon OID3300034027 Open in IMG/M
Scaffold IDGa0334949_002914 Open in IMG/M
Source Dataset NameBiocrust microbial communities from Mojave Desert, California, United States - 45SNC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6599
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (44.44%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Biocrust → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)34.7856Long. (o)-115.66Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001042Metagenome / Metatranscriptome794Y
F011201Metagenome / Metatranscriptome293Y

Sequences

Protein IDFamilyRBSSequence
Ga0334949_002914_1462_1839F001042GGAGMTLTEDCPDGRSQDLTCAEADGKIVIDKMLVNKLTELLITSIYSVHTSRRCEIFLTSLDMHLAQYSISNKNDTAHREFSEKLALLLESYQEDVPKSLGKAESCLGEAIDLINLIVSASEAGVNNG
Ga0334949_002914_17_367F011201N/AMKKSKAKSKMRHGGARPGAGRLPLWKHRPLKLVRLPVAFVEKILEVAHYMDQNEGRLPFSKASEDLEIISGHPSKSLSGEEIKELAAREKARKLAERVMVGDEWVLVSDETFRNQH

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