NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334950_043759

Scaffold Ga0334950_043759


Overview

Basic Information
Taxon OID3300034028 Open in IMG/M
Scaffold IDGa0334950_043759 Open in IMG/M
Source Dataset NameBiocrust microbial communities from Mojave Desert, California, United States - 46SNC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)921
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Microcoleaceae → Microcoleus → environmental samples → uncultured Microcoleus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Biocrust → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)34.7856Long. (o)-115.66Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042710Metagenome157N
F083444Metagenome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0334950_043759_291_818F083444GAGGMLNDISEVFAVKEVALENMDLLPEYSEKVIYFVTAAQGESKNFLYIGFTTNLRRKFQRHNRKVEFEFLNKIGYQINISWIVLPNGISEREGQAVEMCYKRALEPKLNDDQNSFLKIQFEESKKQFENREQSRHEYLKKQIENWEQNGDDKDTIIKKIWEVCKEPFVDKHLNSLAK
Ga0334950_043759_29_259F042710N/AMAENSGKNCERSQNFTASSARDCRYVDVLKARAEELGLDSDCVGDKRKRETWEAVLENHGEEKPAKPKFVAKPYQP
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