NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335023_0031196

Scaffold Ga0335023_0031196


Overview

Basic Information
Taxon OID3300034050 Open in IMG/M
Scaffold IDGa0335023_0031196 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07May2013-rr0095
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3129
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016965Metagenome / Metatranscriptome243Y
F038670Metagenome165N

Sequences

Protein IDFamilyRBSSequence
Ga0335023_0031196_1238_1387F016965N/AMFNINGTDYTITGPVEIISDTQLHVETDKGIILVDDTVEIYKDLRDGIR
Ga0335023_0031196_2542_3087F038670N/AMITILGKEIPNHLDELTIEQFEVITELSNNKELDAVDKHLQIFASLGLAESEFYDVDVADFIEYTNAFNTIPEVDYPTISQIELAGYSYTAELKMTVRDTKLIEKIAIAKPKGYISDVLAVFFKRDDLTPAEHYAEAHLKLKAKLIKDLKANIAIPYLLFITNKLIKQVDKAEDVPTEEV
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