NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335023_0047315

Scaffold Ga0335023_0047315


Overview

Basic Information
Taxon OID3300034050 Open in IMG/M
Scaffold IDGa0335023_0047315 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07May2013-rr0095
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2516
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017447Metagenome / Metatranscriptome240Y
F033698Metagenome / Metatranscriptome176Y

Sequences

Protein IDFamilyRBSSequence
Ga0335023_0047315_2260_2514F017447N/AMNFGSRAISMFNRATPKISKVIGQVANVGRNIGQIVKSGRSIGSIANQLSGNRLSQLPIAQKIQDVANKVESGANYLSGNEDKAQ
Ga0335023_0047315_584_1303F033698N/AMKFLRYKQVGRLNFFGIDDELNAEPSSYYNTKFKLFNNTELNTKLLRFRINNLRDLKLSQHAKIILESCYLPTVIETGLDIKHNSNVVLKFKNVSDSKCYDSSNDNNGSTVIFSHSVQSRPQSIVSVTDTTLAGAVTTYNNNIEDKFDNGISFFNSAPDKLYNFTIANTFTNSTVFEFELLYDMQIGVDIDVNFDRGEFYKFHCSFIICDYDEEELISNDSNEVDYKKFGPHFPLKKSL
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