Scaffold Ga0373889_054850

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0373889_054850

Scaffold Ga0373889_054850

Overview

Basic Information
Taxon OID	3300034052 Open in IMG/M
Scaffold ID	Ga0373889_054850 Open in IMG/M
Source Dataset Name	Uranium-contaminated sediment microbial communities from bioreactor in Oak Ridge, Tennessee, United States - A1A4.2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	627
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Bioremediation → Metal → Unclassified → Unclassified → Sediment Slurry → Uranium-Contaminated Sediments Microbial Communities After Treatment In Bioreactor, Oak Ridge, Tennessee, United States

Source Dataset Sampling Location
Location Name	USA: Oak Ridge, Tennessee
Coordinates	Lat. (^o)	36.0103	Long. (^o)	-84.2696	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F022009	Metagenome	216	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0373889_054850_116_481	F022009	AGG	MMTPECIRPRALFRAITLSLLALGASAIQAQSQTYTVDIRPVLNDLDIKIEPVANSRMLVVNLTNNSPTRVRCNLRFDASPQTPVRATRHINPGQRESSVLNAQRRWFSVTVDVECVPAP

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