NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334983_0289796

Scaffold Ga0334983_0289796


Overview

Basic Information
Taxon OID3300034060 Open in IMG/M
Scaffold IDGa0334983_0289796 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16May2013-rr0016
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)982
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030434Metagenome185N
F090388Metagenome108N

Sequences

Protein IDFamilyRBSSequence
Ga0334983_0289796_160_708F030434N/AMQTNMAITEMAQIVQVILDRSQELQAAASGFARSTGEKANTPDHAGRYNTKINFHEFVAEHSEAAGAEIAVAQYMGIRNFIPTVNTFHDAPDIQLGNLGFEVKWTKYINGHLIIHKDYPRLSDVAILVCNKSPVYQIIGWMPVLWAKKPKYYNAADGNFWVSQRELFEMDALRKSVYGITEA
Ga0334983_0289796_689_880F090388AGGAMALLRLNCRVCAKIGPGMQTHKIVDEFINLPPNVVCVQCLGCGVMGIEMLLDTERARDEDIDA
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