NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334987_0000016

Scaffold Ga0334987_0000016


Overview

Basic Information
Taxon OID3300034061 Open in IMG/M
Scaffold IDGa0334987_0000016 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)140278
Total Scaffold Genes211 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)27 (12.80%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007031Metagenome / Metatranscriptome359Y
F025686Metagenome / Metatranscriptome200Y
F051871Metagenome143N
F091919Metagenome / Metatranscriptome107Y
F098949Metagenome / Metatranscriptome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0334987_0000016_10900_11148F051871N/AMAEFSKQWVEMNDSEMGWDFDIDQIVSELPTNHMIPYICEGFGFIAIGKNEQDQIFLAMPTGNFSEEGSEVDWKPIEEVING
Ga0334987_0000016_23214_23378F091919N/AMENLQIKIVITDGEKEAKTSINIEDYQMMKELHGVSLIDEQVDVLLNEIKKSSH
Ga0334987_0000016_23773_24123F025686N/AMAVRTYIRVTYVAVSEWGKPIMTAYTQEDLKAGLDEYYGIGTDPKAKYLDWTPYDSKYPDEFEGTYRYEVDDMNGGLEPEDVRVYCIEFYPTTRYEVDTQKEALIELTNINLEDEN
Ga0334987_0000016_39306_39527F098949N/AMELLKHEVYSQTIENTYTINHPTEGVLIYKEWIDSNGGECLDFVLRSKDGYEIDEAVLIEEIQEFVDNLETIK
Ga0334987_0000016_81599_81850F007031AGGMIKLIDLLSETQTETKYPPYMYSHAGFGCHVCKFYSMQEDKHYCGNKEYQKYMGTNELIDPITNEQIKDPSMWCSNWFLPKAE
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