Basic Information | |
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Taxon OID | 3300034061 Open in IMG/M |
Scaffold ID | Ga0334987_0000768 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 30109 |
Total Scaffold Genes | 50 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 33 (66.00%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F050233 | Metagenome / Metatranscriptome | 145 | Y |
F057212 | Metagenome | 136 | Y |
F074591 | Metagenome / Metatranscriptome | 119 | Y |
F086842 | Metagenome | 110 | Y |
F095177 | Metagenome / Metatranscriptome | 105 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0334987_0000768_10229_10507 | F050233 | N/A | MGLIELGQYAAALTAIAVLFGMSIKWGIVKPIKAYIDTATYPIHPDSNGGRALPDIANTVNRIESRIGDLDYRLNAIEEMVTKPTRTKKATN |
Ga0334987_0000768_359_922 | F057212 | GGA | MTTIITTTGNNFATLTADQGITSNLIHPDMHKIVQQDTWLIGVAGSARVCDQLQYSIEYPKPPIDVVKSGNWIKWMVVKVMPLIDNKIKDSEMDAEALLVTHGKAFLISENLSVLTASPYWAIGSGAELALGSLAEKQYAPGWHRNHDFSALRAIESASMHDPNTRGTVDQYRSYTNGKVIVKANGI |
Ga0334987_0000768_4375_4575 | F095177 | N/A | MERASLDEKHKIRKMLEYLGITHPAHQVEFMSALLDRPFDTTKMSRQDFYTLVSKLQNIQENRNKA |
Ga0334987_0000768_4596_4718 | F074591 | GAGG | MRNWNWTPRARLIGNLLAAIAVVGAGWVLFVGTWFALGGN |
Ga0334987_0000768_5365_5706 | F086842 | AGGA | MNKADVGKVLAVAMAIDARLGAADEAGFRAKVEGWSLALSETMDFEFARDAVGKHYKNSTDSLMPAHLNAMWTSHRSREHEIDNVRAIGTSPKSQGMPDDVRAKLVELGLKRP |
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