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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300034061 Open in IMG/M |
| Scaffold ID | Ga0334987_0001265 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 24191 |
| Total Scaffold Genes | 39 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 31 (79.49%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000369 | Metagenome / Metatranscriptome | 1222 | Y |
| F001464 | Metagenome / Metatranscriptome | 689 | Y |
| F013888 | Metagenome / Metatranscriptome | 267 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0334987_0001265_18457_19116 | F013888 | GGAG | MSTIGILPASGKASRVGGIPKFCLPISDERSLLQWHVEQMLEVCDEVRVSTRAEWVPIIQNMDMNIKLIVREPSTMSDAVKFMVGDYNDTVLVGMPDTYIHGTQNNIYKEMNKVSGDLVLGVWECSEELKGRVGQVLLSGDKVVSSMDKTNNCDYSNMWGTMLFRKNLVRYIDPDLEHPGKQIQEWIDMSLDVRAVRPGGKYMDIGTLKGLKQLYKEME |
| Ga0334987_0001265_19476_20012 | F000369 | AGAAG | MAEIELAQHFDRMNKVVEELLKGNSATQIASITGFSRKEVVEFIDEWKSVVHNDSSLRDRAKEAISGADQHYAMLIKEAWKTVEDADQSGQLNVKAGALKLIADIEGKRIGMLQDVGVLENNELASQIAEAERKQEVLVKILKEVTSTCPKCKMDVAKRLSQITGIVEAVVIEDASGI |
| Ga0334987_0001265_3176_3658 | F001464 | GAG | MARKTRSKTRKKFLYFFLNGKIHKVLKSSRAKDELIAWSYEDKKRMLYSYTQVEKSMENAYSIKDVSSLLNKHKVTIEDYILEGKIKVPARIYPIGNPDSSWSKFMFSHKDILDLHEFILEVGHSSKVPSRAEILALLKHNLILYTKTEEGKFVPVWKAE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |