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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300034061 Open in IMG/M |
| Scaffold ID | Ga0334987_0009281 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 9232 |
| Total Scaffold Genes | 22 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (9.09%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002259 | Metagenome / Metatranscriptome | 577 | Y |
| F003659 | Metagenome / Metatranscriptome | 474 | Y |
| F006697 | Metagenome / Metatranscriptome | 366 | Y |
| F008615 | Metagenome / Metatranscriptome | 330 | N |
| F016114 | Metagenome / Metatranscriptome | 249 | Y |
| F025444 | Metagenome | 201 | N |
| F030991 | Metagenome / Metatranscriptome | 183 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0334987_0009281_1042_1230 | F030991 | N/A | MTLKYLGCDQKYFRYELYDGDRMELYVETKLSARATAKLLFCNFGIKHIVLKIYNRTYGIKT |
| Ga0334987_0009281_1717_2082 | F003659 | N/A | MTAADVIGRYLIAKKDVPVYDGPFGTRIGTIKKGNSTPEVYSYLVRQGQVFWVFDYTIPGQTPSAYYALQSPDAFSLSSVPGNVVIAPNVLPSVDVFPAGGIKKYAIFGALGLLALLILK |
| Ga0334987_0009281_3719_4051 | F008615 | N/A | MNTPNTFGAKMFTRFMRKGWHISFTDSYQDRVCVIPPERLDAKHLFGIYIPVMRHTWQPDLKREWWAALQDKNTMHGPTFEASAHPDDIERFAAFAAWIGDLLRNPEKFI |
| Ga0334987_0009281_4054_4221 | F016114 | N/A | MVNKYWNAAFFDSRDVETLNEMAAMARRQLICVRELQRDELLRLKMKYPHLTTKD |
| Ga0334987_0009281_5372_6007 | F025444 | N/A | MYLQLAGLEPLDTAENPLAPGATPYKYKNYYLGQGQDIILPDALFPPNVEGYAAALKSVADLYGKFSKGKKTPAAVVKTPGMGVDPATLMLIAKGIYAGVQALSTVFRGQVTTAARQRITELYNGNNFNVQNLNRMTARQLSDAITQIDSQINMTPRTQFGRQMALARFRLVYQQRFDQVSGGGGFLTTLPGWVLPAALGLGAVLFLRGRK |
| Ga0334987_0009281_7041_7598 | F002259 | N/A | MGMSAQDKMLNVASRLGLTTLKDMQGTTRMVYDSQTTAAINHTFFKGASQRAFPLSNVGANGNQFQVNEALLVEKIGFFIPSAADGIAYIGLGGGFSVKFDLVIGNKTVIKDATVEFGGEQAFYNDGTAASSVIDLEGVGILIPPQVEYYVIAKVFNGSSRTGEASRLGCYLFGTGALLNFNTTI |
| Ga0334987_0009281_7601_8140 | F006697 | N/A | MANQVQKLSYVDNKLGVSLPGQQTTRVIYDSINAAAGQQFFQFFTNFAGKTEFQTNLTTNKLDSAESMVIKSVQIIMNSATSSLADHLNLNITVGNQVVLKDFDPSFNATSRGLAFDRLHSGFNSAGNLEVRLLTEIVIPPQVNFKAELQISNALLAANDDVTIIFKGYGRIFSAGNSF |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |