NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334987_0020890

Scaffold Ga0334987_0020890


Overview

Basic Information
Taxon OID3300034061 Open in IMG/M
Scaffold IDGa0334987_0020890 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5878
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (71.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003067Metagenome / Metatranscriptome509Y
F020906Metagenome221Y
F030434Metagenome185N

Sequences

Protein IDFamilyRBSSequence
Ga0334987_0020890_1163_1711F030434N/AMQTNMAITEMAQIVQVILDRSQELQAAASGFARSTGEKANTPDHAGRYNTKINFHEFVAEHSEAAGAEIAVAQYMGIRNFIPTVNTFHDAPDIQLGNLGFEVKWTKYINGHLIIHKDYPRLTDVAILVVNKSPVYQIIGWMPIVWAKKAKYYNAADGNFWVSQRELFEMDALRKSVYGITED
Ga0334987_0020890_2569_2772F003067N/AMTAAQSLLAIAIAICTLIGFAAGLVRHLVKYYLSELRTDNNGGHNLRGRVDRIEAKVDSIYEMLLQR
Ga0334987_0020890_2975_3232F020906AGGAMPTSAQVTVTTTATLLVAANIMDQTVWLHNLGGGVVYLGDANVTTANGYKMDNGDKMQVPVGDHEGLYGIAASGTHTIAVLKQVN
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