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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300034061 Open in IMG/M |
| Scaffold ID | Ga0334987_0033848 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 4418 |
| Total Scaffold Genes | 9 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (11.11%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000710 | Metagenome / Metatranscriptome | 925 | Y |
| F002287 | Metagenome / Metatranscriptome | 574 | Y |
| F004838 | Metagenome / Metatranscriptome | 421 | Y |
| F083616 | Metagenome | 112 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0334987_0033848_1856_2464 | F004838 | N/A | MALSAQDKILYVANKLGLSSLNLMQGSTGAVYDVDTDISGQIFTSASRHQNPSVTNLTQNEFEVNEALLVETIGFYVKNAAGNTLNFQQIYGSNAVILFDLVIGNKRVMKDTPIFAAGSPYTFANVANSSAQIAEEKVPGFIPRHQVFLEGAGILIPPQVQWYVDYRIFNVVTGAAIAATDAGTIGCSLFGTRVLLNFNTSI |
| Ga0334987_0033848_2464_3054 | F002287 | N/A | MSQISKLGYVDSKLGAPSSGQQTTRILFNTIEAPGTTSSLTFFKTFQGLTQGQTNLTQNKLDSMESMVIKTIWLAQYSTSGALGTVGGLVQQTLSIIVGNQQVVKNLPIQFNQGVNGQAFDRLHDNAGATANDLTAETATYQRFMPCEIRLLTDIVIPPQVAFEVRIDSNAGVYGTGAVVCALSGYGKIFSAGNTF |
| Ga0334987_0033848_3069_3458 | F000710 | N/A | MDISYRQGIRSKGFAITCPTGVTQQTLSLSGLAKSFEGILLTSAFTATPQTVINPKQLRVTLTINNDVAIEDDVALHYASPATGGFSGGFPFFIPIPRRLTGQDTIQIRFTNAAASQNVDVTVWYRNEL |
| Ga0334987_0033848_78_848 | F083616 | N/A | MFLQLHDGPDLPYGLRPIPYPKRSGPMMPVRYAEDPFAPGSPVMQTTPYRLLSGCDQAQVYAEFVPQNKEGWKVRLNQVKQSQQLVKNYQMLRAAKGTGSVPVYSADGTITAFKQGDKVEEVAAYIELGLKAFQIAQQGIDAGDARRLRDNAQQLYDENKWGIADVCNQTLVQLQNNAQNCYDSLNWWLRDQGTPGKSKGQIRISNRAVVLRQNALLILVKEIEAKGGSFTPGGKGAPMGIAAILALVVGAAFLKF |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |