Scaffold Ga0334987_0036594

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0334987_0036594

Scaffold Ga0334987_0036594

Overview

Basic Information
Taxon OID	3300034061 Open in IMG/M
Scaffold ID	Ga0334987_0036594 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4224
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (15.38%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F049561	Metagenome / Metatranscriptome	146	N
F096905	Metagenome / Metatranscriptome	104	N
F098924	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334987_0036594_1442_1762	F098924	N/A	MNVLGKLFNKKKTYPRDNKFEVLIIGEDKSDFQEMLGITNKRKEELVRLAFKSYRDNDLFTTSCQVTVAECTHINEVVFVMTVLTKIREVESNPLSAILSGIGRGE
Ga0334987_0036594_1752_1970	F096905	N/A	VESKIFTSVIGFNFELNLVDNDGEPIKTGAKRIEYLSSDAPNVGTKIGGERWFTNFNEPLLSKIRDYRRRND
Ga0334987_0036594_1963_2391	F049561	AGAAG	MTKIRLELEETDMFNAIKKILDHPNKVEIAKALTSILAPNERLSSIFFKTYFGSSAPQILPEGTMITVSPRDLSYKANIDGMKRLGLLNISGHATAIVKEFKGFHDFTTYIVNFMNVDENDKTFEDTGFIAYNQVESIIEDL

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