NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334987_0044501

Scaffold Ga0334987_0044501


Overview

Basic Information
Taxon OID3300034061 Open in IMG/M
Scaffold IDGa0334987_0044501 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3739
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → unclassified Geobacteraceae → Geobacteraceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F046179Metagenome151Y
F056323Metagenome137Y
F072111Metagenome121N

Sequences

Protein IDFamilyRBSSequence
Ga0334987_0044501_1599_1808F056323N/AMIRLFSLQEMADDLKLPPAVVALWAADGYIPHVMREGMPLFDPVAVGKHIAKQLNELNKIDDGNEPTTN
Ga0334987_0044501_2158_2346F072111AGGMKKQAILAAAIFGHLFLFLFVDSLFEAPTRWKMWAFYGSSLLSVAVWGAYVIKDDMDGGGTA
Ga0334987_0044501_2601_2909F046179AGGGGGMSRPQWENDALLAIMRDGVANEDAPWVLECIQKAADDIAEMDDDLQFPLLMEYHANDKAALCNLDDEAFSDVLACLGIDLHRLETLWERKHIDPPADDWSME
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