Scaffold Ga0334987_0045187

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0334987_0045187

Scaffold Ga0334987_0045187

Overview

Basic Information
Taxon OID	3300034061 Open in IMG/M
Scaffold ID	Ga0334987_0045187 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3704
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (33.33%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F009945	Metagenome	310	Y
F026794	Metagenome	196	Y
F037053	Metagenome	168	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334987_0045187_2218_2580	F026794	GGAGG	MMHSGDNPGSISERDLRVTASQLRHAENDAREATRGEVTFDEIDRRYADPISREEAVALRPFFEAFCEGRSVFRYECKTRHGRPMHVWQAIHEFDLHDSPLSLSLNWRDDAPNQIESPQK
Ga0334987_0045187_235_522	F009945	GAG	MSTALATFKRDNGVATHRKTGAGHRYAWMAFFATVTMRDGTRRAFTELAHEYSMATLVMRDKVTEGADELSACKLLAERNGIPWPADEPKRKAKP
Ga0334987_0045187_2_238	F037053	N/A	MNTPTADDIIADLESRGLGWSLDHTGQLIEARVWDWPHVIGRYRPHTTEPLAKMLAAACFDVDWTKYPVHFATAEQRIR

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