NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334987_0085476

Scaffold Ga0334987_0085476


Overview

Basic Information
Taxon OID3300034061 Open in IMG/M
Scaffold IDGa0334987_0085476 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2473
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010684Metagenome / Metatranscriptome300Y
F019324Metagenome / Metatranscriptome230Y
F034575Metagenome / Metatranscriptome174N
F063708Metagenome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0334987_0085476_1237_1383F010684AGTAGGMSEYKVEVIFEPTGDYMTFRYEAESEDEESLMNEVLSQLSIVSWKEEN
Ga0334987_0085476_1_135F019324N/ALDNMVLAIDSALTTVNPDDDPWLHRNLTQASDFLSGLWAEGYFD
Ga0334987_0085476_378_530F063708N/AMDLETFKQYLNLHLISLEQDLEENPASIHVVDIEGQIYATKHLMEVLNGE
Ga0334987_0085476_520_807F034575GGAGGMENNTTLDPYLMKQVEMGMDGADILHGHLKTLMYEAEQQLDLCIEAEEYSEEAMDSMARTEASGYLDALSEVYALTYAIAFAKEDIKNRKEILGE
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