NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334987_0085621

Scaffold Ga0334987_0085621


Overview

Basic Information
Taxon OID3300034061 Open in IMG/M
Scaffold IDGa0334987_0085621 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2470
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036551Metagenome169Y
F037113Metagenome / Metatranscriptome168Y
F066470Metagenome126Y
F075715Metagenome118N

Sequences

Protein IDFamilyRBSSequence
Ga0334987_0085621_1015_1314F066470GGAGGMTDTDRRIATAKRLATGYRNYRRARDRALARLSNHYPETYKELLEQEKISDEQLGKKWLDIDGNTDAIDSVHTDTTSPHTRGSEQAGATEDEGYNGGKA
Ga0334987_0085621_229_402F036551GAGGMNKEEYKCELCGSGVWRVLHAGDESNCECEGECLRVCDNPELEDGCDGVAELVERGR
Ga0334987_0085621_402_542F037113GAGGMSKWTVWAGGSEVNWQHYTHKIDAERVAEFWREIKGYDDVIVEEVK
Ga0334987_0085621_542_709F075715AGGAGGMNKEYLAAKALLCSNLAQEQIANGNEEEGVKNLKRMVRALNDIHLINIEEGRGRK
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