NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334995_0019558

Scaffold Ga0334995_0019558


Overview

Basic Information
Taxon OID3300034062 Open in IMG/M
Scaffold IDGa0334995_0019558 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Jul2012-rr0045
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6069
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (60.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000888Metagenome / Metatranscriptome847Y
F006300Metagenome376Y
F013882Metagenome267Y
F020893Metagenome221Y
F040084Metagenome162N

Sequences

Protein IDFamilyRBSSequence
Ga0334995_0019558_1070_1297F000888GAGGMSDTMTYFAELDDNNVVVHVSVVTQQFMSENPDRYPGVWVETFRDTAGKTYAGVGYIYDWEKQNFTPPPVKEFDE
Ga0334995_0019558_153_377F020893GAGMPTEIYVALISGIAIICAAVLPAVLIERARKENADDHQYVRRILARVERKIDNHLEDHDNAVTRRNKNQTKQAG
Ga0334995_0019558_2_199F040084GGAGGMPLRDEIRIKQNRLADLTIWLDAQPNGEEWYEIIYDQQYSSQAVAGLLTKHGFKADSNLIARFRTK
Ga0334995_0019558_5184_5675F013882GAGVAETSVTVVGVKETLRELQRMEPELAKEIKKDFKTIVDPIVKDARGKVVNLPLSGMSRNWKGGRLMPWAQSAVSKSIIARFSNRRRGNSLAVFSVTMKSPAGTIFDMAGRGAPNRLASALSSLYGAPSRLMWPSYERNADQVNKNLEQVVEKINKATTNRLTR
Ga0334995_0019558_897_1058F006300N/AMLEDWLKAFVAGSAAVFMTGNYDLENALKTGLAAVLPMIYAWANTKDSRYGRQ
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