NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334995_0049612

Scaffold Ga0334995_0049612


Overview

Basic Information
Taxon OID3300034062 Open in IMG/M
Scaffold IDGa0334995_0049612 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Jul2012-rr0045
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3440
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (92.86%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000808Metagenome / Metatranscriptome882Y
F003393Metagenome / Metatranscriptome489Y
F012455Metagenome / Metatranscriptome280Y
F093770Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0334995_0049612_1524_1733F093770GGAGMITLKHSVNLVTEIDEHKMPERLLNTFLNLSELEMETLLRETFISALKGEGFLDKLNENNSWATLKVVE
Ga0334995_0049612_252_491F003393GAGGMIDLENDDTIQVMDYVKVDLLNAGQLEIDDCILINDEVVSIVDIISLPDGYTLEIVNDFGEREIVQVGEYDQFDLMMLD
Ga0334995_0049612_2547_2672F012455GGAMIKEIKNKITRIQELRRSNAATAIPNKKKYSRKIKHKNKLQ
Ga0334995_0049612_780_989F000808GGAGMEYNYAITTSYDGELIHTLRVSDMLEAVSAWDKCVDYGTAKEYATYNLSDPLGKMYTKTFFTNGEVVIK
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