NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334995_0086703

Scaffold Ga0334995_0086703


Overview

Basic Information
Taxon OID3300034062 Open in IMG/M
Scaffold IDGa0334995_0086703 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Jul2012-rr0045
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2416
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014489Metagenome262N
F015570Metagenome253Y
F029673Metagenome187N

Sequences

Protein IDFamilyRBSSequence
Ga0334995_0086703_1954_2112F029673N/AMAACSENTITGMANAWDLGAEHERDVVCSLLFNMIKDISLAQNIVDTIRVRE
Ga0334995_0086703_2109_2405F015570AGGMNDKLDQAFDLLEFDVTDQIRNMSYLAEQRKVATGVTDGTVQRALVRDLTENLRTLQTSNDPLLLRNDVLEEVAGQLAKLPFGDTAASYAAFVRAMKS
Ga0334995_0086703_484_858F014489AGGAGMEMKQQHYAILKRLQHGASSLKRFTDKDGEVGNQGFHYLRYLNDLQNFGYALEIGDVWHITGFGVAKLAEQKPRVAKERVAAGTTTEAYDGADLKQSGIREGAFDFMKYPSKFGDNLTYPRTSV
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