NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335000_0000507

Scaffold Ga0335000_0000507


Overview

Basic Information
Taxon OID3300034063 Open in IMG/M
Scaffold IDGa0335000_0000507 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Oct2008D10-rr0053
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)33588
Total Scaffold Genes54 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)38 (70.37%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012965Metagenome / Metatranscriptome275Y
F021975Metagenome216Y
F025995Metagenome199Y
F047988Metagenome149Y
F073497Metagenome / Metatranscriptome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0335000_0000507_13070_13567F047988N/AMSEDDLKQLSEFQEPIVLENPDTSPNAVLEVLPPVLREIPQTRHHVKDEQLGLQIRDMAKLGLGKQNVALAARVSVYILEKYYLDEFLEGQADMQRGLAAKAVSEAMEGNTAILLHLLKTKLGWSEHQTLEISGEIRNVVSSRPLTKEEFIQRYLTQNGEDGSGE
Ga0335000_0000507_20568_20885F021975GGAMKYKLFQYCHKQQKVVPIEEVHREYQSHARDLFIQDEMEPTRNPLNPKEIYTSKSKLRAAYRAAGAIEVGDAYDRGYTPERESGATERRLVQNIKAKMIERYRNG
Ga0335000_0000507_23473_23778F073497AGGAMASATTLIGLGMPAELASAVSDGVNSNVVNATAAGVRTKQAINNVNDTTPTAAELTTSFGAPATVGSGFVGVVKDADADTNCFVVVSNGTSYFYLKFTKAV
Ga0335000_0000507_25545_26402F012965AGGAMTIATVIQNVANEAGYTVESNVLASTEVTTKQLLAIANRINRDIFEAYPWPKCYASGSITLVNGQATYALPAAFSYYHYETFWNQSTRWRVLGPMTEQEYAEIQGFGLNTAVYQRFQIRGITNSELLISPTPGASGDIIIFEYIADRSVRPVTWTASTAFAANSYCFYNGNYYQTTAGGTTGATAPTHTSGSVSDGGVTWTYYNGAYNEFLANTDRSIFQEKLLEQGVLERFAEIHGLDSIRPRFDVQLNEEFSRDQNGKVLYAGGHMRDPMFARNGVAVFGTWI
Ga0335000_0000507_2878_3066F025995GGAGMPIILSIVRHLLTLAAGGLLTFGIEERDAANLVHAAEPVVAGAVLYGVSQAWSLVDKKKRPK
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