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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300034063 Open in IMG/M |
| Scaffold ID | Ga0335000_0000672 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Oct2008D10-rr0053 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 29424 |
| Total Scaffold Genes | 44 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (18.18%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F033771 | Metagenome | 176 | N |
| F036299 | Metagenome | 170 | N |
| F043476 | Metagenome | 156 | N |
| F063621 | Metagenome | 129 | N |
| F090574 | Metagenome | 108 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0335000_0000672_10392_10742 | F036299 | GGA | VIRTSAIVHTDRQVVTAGSLTELTLPDLCDSAGLIRRFALRDSAKTSVLSVANSGSGIVIRLRRDTVVERLILRDTTIVERTVVVEPKKRKSRWPILLIGAILGLLASVVLFARLK |
| Ga0335000_0000672_27006_28190 | F063621 | N/A | MSITIISALPSLLPVGNSDVVVVSSNNTASANFRYVCDVSGSLSSARLKCDKLPTTNNGFFGVSKVVETLIAPKIPQLTSGWQDGGYAVNTNLTFREEFGSPPTVATGGTASASLIAWQAAFRQQDYAAYSPSAYIAATVSGDTPAIKVFSNRPVTSTLGSGDSDFIGVLSNVSGIALRVSYDGGTPRAAFLVTGSVSAISNIINAGPYGVYNLTSSQCSDGNAGSVNFPTDGGKIAVLVTFNTAGTNTSAFSRTAAYTYVIDNCQRYSDLRVFFRNMYGGVDGYTFTRMNRQRVDVDRKTYGYNASVYGDDVYDKQWSVTYRDTYTLNSDWLTDAEFTWLQEMIYSPECWIQIGTQLVPIVVQTNTYNVRKRVVDKLQQISVDVQVGYENTAL |
| Ga0335000_0000672_28918_29424 | F033771 | N/A | IYTASDKKIGVIAVLDGIPIEQVKKMTIAEVNKRYGEINAASKSLSSLAAKRHAKVAGKWYQFEWFIDEISAGQLVELYSYDMTSEQGVIDNLHLILATLSRECRVWKWWPKAYDGKGHKQRAEAMLQMTMGDVWGYAAFFLQLSEPLLTIMRKSLTEQGTTTTTAKA |
| Ga0335000_0000672_7287_7541 | F090574 | N/A | MSLEERVEAMVSLSHNNMQLGKVVTLVGQLFQNVSPEVSARLYPIWAEAYRSALQDMQNAYNLGVTEERTKCIAMMSKLKTTNQ |
| Ga0335000_0000672_7538_7972 | F043476 | AGGAGG | VLTLPTNIDKAEIEAFVNHVTAEVMDGNVDPLSVHIRCKAVVKALESIIERTEDLAKDTAATYGKGEFKFHGASVQLREPRDMPDFNHDPVCVELADRLKARHELVKTAFKMADTAAIVDPNTGEVVPVVPVKPAKTTLTVTFR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |