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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300034064 Open in IMG/M |
| Scaffold ID | Ga0335001_0000410 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME14Nov2013-rr0054 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 24771 |
| Total Scaffold Genes | 55 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 43 (78.18%) |
| Novel Protein Genes | 8 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (75.00%) |
| Associated Families | 8 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002764 | Metagenome | 531 | Y |
| F009140 | Metagenome / Metatranscriptome | 322 | Y |
| F011742 | Metagenome | 287 | N |
| F012211 | Metagenome / Metatranscriptome | 282 | N |
| F020138 | Metagenome | 225 | Y |
| F040534 | Metagenome / Metatranscriptome | 161 | N |
| F044970 | Metagenome | 153 | N |
| F046258 | Metagenome | 151 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0335001_0000410_2871_3095 | F002764 | AGGA | MKEPEDEAFEELSRRQGDWGLQGSRKHQIMRYAENNARNEVIEEVAQHIEKCTLAFGKDTIQSFTVYIRGLKTK |
| Ga0335001_0000410_3082_3342 | F011742 | GGA | MTTIEFVPFDWVDDDFNPEIDRIEVDYQWHEADDSVGLIAYCEKTVKWMRFNLEIKDITDELSYADLAYLKHEIQRNDKEIADERT |
| Ga0335001_0000410_3568_3744 | F020138 | AGG | MNQQQTNRLNAFWQDVEAHKALNLSSPESVLVILKSVALDALLAAQDIEQIGVNDDTR |
| Ga0335001_0000410_5794_5979 | F044970 | N/A | MLIAIEQKTKALENKCLNKNYAGFTADIQTIQSQLTLLTMWITQAQCEQVRENTYRILNK |
| Ga0335001_0000410_5900_6205 | F046258 | GGAG | MKHLTIAIKRVLSYFEIVTLQPSLPILLKDKTPAKMTLPTISITDPKFVYKSAACTDITQTFEKAKNERLQRLRNNADSNRAKDQSTGEQVSKQKLRRVHG |
| Ga0335001_0000410_6259_6609 | F012211 | AGGAG | MPTDEEQFKYECWAIVQELDPEDIADAIGDSIALVEAIKANHVEDVASIVMNRVELKVRRRAELRVFDVVKTQWIDDIEELQHYRNLRIERVQKALDERKIMEAKMDGPFQQMFDE |
| Ga0335001_0000410_6669_7115 | F009140 | N/A | MQGIGVFPSAKNYKYHHTEVFGDKQMRLNLTHRTLLKRLSSGPRTMLEMTHSYTDNNSVSFHYQRYLPDLEQFGYVINFQEKWHLTEYGRMEMNRAISGAAMRIENGSVKEPYDGKELRRNVFRRGCYDFLQLPSRFGDNFVPRKTPT |
| Ga0335001_0000410_7481_7714 | F040534 | AGGAG | MNTDKSGEGRILSLSTLGEPMSEQEFEDKMNTYELDQQYAEYIMERRNVGNGEMLIRFMERGELYEDFKEHIMWGGK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |