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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300034064 Open in IMG/M |
| Scaffold ID | Ga0335001_0000977 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME14Nov2013-rr0054 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 17159 |
| Total Scaffold Genes | 37 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 29 (78.38%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F005703 | Metagenome / Metatranscriptome | 392 | Y |
| F009952 | Metagenome / Metatranscriptome | 310 | Y |
| F015860 | Metagenome | 251 | Y |
| F032265 | Metagenome | 180 | Y |
| F036215 | Metagenome | 170 | Y |
| F095419 | Metagenome | 105 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0335001_0000977_1226_1399 | F005703 | GGTGG | MIGWIAACIFAGLMLPLIAMLYLDTLETKNEAKVALEKLEKLRRQVEQQQRKGKEND |
| Ga0335001_0000977_13084_13686 | F032265 | GAGG | MATLPQFKQRQIARRSTSDIDRLAKQYKANIDALTGEYQTAFTGYQAGVAEKMKPFEEQMATYKESLLPTYETQKTAYQKKLDEYTATLAELEKNPVTERTGIKETKKPRYGLFGLAGYETKREPYTYYEPKPIPTFTEKAPALPTAPVAPEIEKFDEGEFGTKRTAAESTFKREVGERRAARLGAVSRKMTRPMLRGAE |
| Ga0335001_0000977_4733_5017 | F009952 | N/A | MKVGQIIRDAQLDLFEQRDADFLARCRAVAAEVCRQHGSVSINDVRERIQIPAHLHPSVLGAVFRTKQFVKVGLVEANHPQAHARVVRVYQLQE |
| Ga0335001_0000977_7143_7379 | F015860 | GGAG | MHVSYVKLFRDDEGTVRDTQEANGEIRNFQHQIELLKHALEREMNTVADLRELLDSVRRIAYELNEEILKDTDAKTTK |
| Ga0335001_0000977_7544_7837 | F036215 | GAGG | VSSADELACPACGRVHPDAKLITLPDGTSVGSYSMEYRAYTEAKWVLEKLPVTVNRRRKSTPQISRRDYILGVQDRRGQESANELALMVTKLWKASK |
| Ga0335001_0000977_9120_9416 | F095419 | AGGA | MTNDNEIKPSEGKAWKNAEKTEAWHGDYKGTFVMPDGTKHFLDVYVNKKPDGTVWFKLKVGKPKMSSAGAGSAAPVFAAAPQPQPKAVVPDTDDDIPF |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |