NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335001_0001156

Scaffold Ga0335001_0001156


Overview

Basic Information
Taxon OID3300034064 Open in IMG/M
Scaffold IDGa0335001_0001156 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME14Nov2013-rr0054
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15975
Total Scaffold Genes29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (68.97%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylococcus → unclassified Methylococcus → Methylococcus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F049614Metagenome / Metatranscriptome146N
F074551Metagenome / Metatranscriptome119N
F077017Metagenome / Metatranscriptome117N
F096872Metagenome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0335001_0001156_14896_15141F074551GGAMTQPERLEDQILQQVLVIQALRMKIARMESIYTTPRSVKSTGQNGTTEDTRHQRDTIEEYGPITPRCVTDKEVEQAEDDGA
Ga0335001_0001156_15138_15623F049614GGAMTNSRMKGKNGELDACRALEKLFPFKWERTAQRYGKGKADIEAQCSWKIHVEVKRRKTGYSYVYGRLANDNLIVSGSLLICRLSKLRTVMDDGVCLPNVAPRCAGLEDAMLQARTDARVGWLPIVLARQDDEEWLLAWREEVDTRLMEEVRTWLDGSTKPI
Ga0335001_0001156_4806_5309F077017GAGMALDIAKFRSWARIPHTEDDPAIGIAWSAAVRELEERTGWCVESVTRTQWVPAAPVTIYGGLYLRLERQGDLAGTTAVYNDSATVPLTGTCAKIMINGLVYVDMDIDALTYPVTLTVTAGNAALNPLLEMALLQRVAHHVASRGDDTVALDSTYWDRITGMMGKGIG
Ga0335001_0001156_8965_9495F096872N/AMAFQNPIFNGNLYGGLTRFAMNGFAQTQRVATANAAGIKFAQGEAFAKAPTKSVLVSLESATAISGAANRWTYAVKIWFPTPVTGTGITVPTNDKSGTYAAAINLREWHNTSTLVDGMNISIAPAATVGPVGSIYDSGTASWPTGELSAKVELHVCNDSSGAVFAYFDRPNPMRCT
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