NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335001_0024725

Scaffold Ga0335001_0024725


Overview

Basic Information
Taxon OID3300034064 Open in IMG/M
Scaffold IDGa0335001_0024725 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME14Nov2013-rr0054
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3529
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F047555Metagenome149Y
F091636Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0335001_0024725_146_631F047555GGAGGMSLQAQVQAKVQARSQFANGLTTEIADHPLTFFFDVGDCTKVWSDRRTFALGVDEVDFSAIGIGTVKLLCLKNLSTTSQIALSAGWTGSQFSLFRQDVTAWNFSPIINLGALTLRGYPIREGGAFLLSCPNSAGFATTSGGSILRVGGTTGQNYEIYVMGT
Ga0335001_0024725_2274_2711F091636AGGAGMIHSQNHKVVANLESAAVGATATATLTIDTIGYDHASVTVLRASNASTVFANVVKVEESDDNSSYSNVTALVGGGVGGFSIPAVTSTALTSVLKLDIDTKAKKRYLKVSYTPGATANVAMVARLGRAEESPVTNADAGVIGRVVG
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