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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300034065 Open in IMG/M |
| Scaffold ID | Ga0334827_002042 Open in IMG/M |
| Source Dataset Name | Peat soil microbial communities from Stordalen Mire, Sweden - 714 S1 1-5 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 10313 |
| Total Scaffold Genes | 25 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 20 (80.00%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Sweden: Norrbotten County, Stordalen Mire | |||||||
| Coordinates | Lat. (o) | 68.3532 | Long. (o) | 19.0475 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F048424 | Metagenome / Metatranscriptome | 148 | Y |
| F059437 | Metagenome / Metatranscriptome | 134 | Y |
| F065202 | Metagenome / Metatranscriptome | 128 | Y |
| F102028 | Metagenome / Metatranscriptome | 102 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0334827_002042_5561_5728 | F065202 | AGG | MRAAAHGWKKPGGGGPSVAVGKEFMHADERSKKGARSKEQRSDHKREMDSWAEGK |
| Ga0334827_002042_6982_7425 | F059437 | GGCGG | MVIGNRYLQGSPILPYANVKAYPGTDLFMDLQFVDHTNTPVIPTSISIEIDDITNSVVMAGPTTLNPAGATGTAGVPFTYPAFAATMYLQCLASMWNMTFPYIGSQSCQVGMQFTAIDSVTGQPFTSTAVIAIIELCALATVSGLQY |
| Ga0334827_002042_7747_8289 | F048424 | GGA | MMLTEELEEVGRRTRVLRDRVLVKVLPYVHPTLETPGIEINKGVVIAVGYGRRQRRKVAFKQEISDGPPVLSADGRVMQFAKSKLSGKTLYFEDGAETGAIIPMQVKPGDVVEFSFRNVTLVDFDRCGFPGIGHLAFVWQKAIYSVDPDESLNECLMWQQSAGYDRNGNFMSGAEDWHRA |
| Ga0334827_002042_8286_9389 | F102028 | AGGA | MSEGYGNLGKTDQTIPGQPKNPWGKWPKINPETVAPLREGKPDLYNHQPTRFVSKDEAKARGWKHFWTGELCVTGHRAARYVSNSSTCVDCVRVEKGQLPVYGKGVPELEEARRRNYTQKNTSAANTPPQPNAAERNFLAKYAEHKDFALAADACGRTEAEFLAILSWNATFRDAVNRLEESIGVTRTLSISEDFEWTDEKRRAFMITYANTADMKQSLRSIGATNVQFHKELSANSEFQRDFEDATQIARAVFDHAAGAAAVKGDAKMLGRIAANFFPEKYGENLKVDLNVKQNLSLDQAHAQLAHILSRFDRQGLLAAASAADETPIEAEYQVVESAGDDETPADPEPASADPGPDPNSDLVSGS |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |