NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335019_0000033

Scaffold Ga0335019_0000033


Overview

Basic Information
Taxon OID3300034066 Open in IMG/M
Scaffold IDGa0335019_0000033 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Jul2017-rr0087
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)81177
Total Scaffold Genes110 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)50 (45.45%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013514Metagenome / Metatranscriptome270Y
F036765Metagenome / Metatranscriptome169Y
F047649Metagenome / Metatranscriptome149N
F049575Metagenome / Metatranscriptome146Y
F063620Metagenome / Metatranscriptome129N
F072267Metagenome / Metatranscriptome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0335019_0000033_77634_77960F036765GGAGMTIRETELLKLFAKADKLQLNVVVREDKDGDYVVRIYEMFRQEGFDEKVVITQKGESDWNKGAYGFDAMMDILDEMLEEKRQEEIKAQKRQELLARLTDEEKKLLGVK
Ga0335019_0000033_78282_78494F063620GGAMTNHIIPKVAYIPLEYHMSVEDFLEVWKDMEMEEKPTQEDYDTFILDRGKSYFYDMRGEIENNIRLIEDN
Ga0335019_0000033_78491_78676F047649N/AMRYYESRTYEHQCDFDAKNRAEKASQDYYNKWINLCKEVRNLVREQNLTITPEFAKLIGL
Ga0335019_0000033_78977_79138F013514GAGMLVDSIEELQKYLDDHNITFEEYMRANMITDEDKKYFDKIWMDAIYKNFGEDT
Ga0335019_0000033_79125_79337F049575N/AMRKMTKLSAADLMVIHNTLYKSLSVVGNSIWTQETRERVMDKVSIIMEQMKAEVVCGDVEPIVVSGDVGG
Ga0335019_0000033_79321_79857F072267GGAMTERIGYKLNPNKLKGAPQIILPYFVGAFYYTEDYEYFDVIKPYLDIPEKPKTLDEITQEFDEKIDKLIETTKEKFECSKYFAGKRYNQKFDKIIENFEYARKNECFPQKLTLDYSKFCATGSSVETSFVIKQGNNHEGYYTIGNGYLRFYMTTKPNAITRWFMDKCLSIRWVDEKND
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