NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0335019_0000036

Scaffold Ga0335019_0000036


Overview

Basic Information
Taxon OID3300034066 Open in IMG/M
Scaffold IDGa0335019_0000036 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Jul2017-rr0087
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)77535
Total Scaffold Genes120 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)65 (54.17%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Aurunvirus → Synechococcus virus STIM5(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008402Metagenome / Metatranscriptome334Y
F008943Metagenome / Metatranscriptome325Y
F014121Metagenome / Metatranscriptome265Y
F024768Metagenome / Metatranscriptome204Y
F049659Metagenome / Metatranscriptome146Y

Sequences

Protein IDFamilyRBSSequence
Ga0335019_0000036_48436_48651F008402N/AMIDITTQIRIQNHADYWYTVEDLNVDLGCEGFTVSYWEIRKGEGDKRVNFITMDKEEALAVADAIYKLFKN
Ga0335019_0000036_49138_49356F008943GGAGGMKFNGFDWVFLTIPIFIIVAAAVLTYGDQQQRVLFQQTYNKNLECRQALKDQTVGRVNEICGDVPAIGAFVK
Ga0335019_0000036_49353_49559F014121GGAGMTNTAYQIWETFKAELIVDPTEDMKQALASSIRVISSLIYRDGVLANEPWLTHTAQELNEIAGDVEAL
Ga0335019_0000036_50672_50944F024768GAGMNYKTEIIDGRKAVVRHFFKPHEIQVGSRWARADGSKGYVTVEEIKVYPASDHEENHWYEIYYSWEENGVKKTHNKDQFAFQCRYCLIVE
Ga0335019_0000036_9558_9848F049659N/AMAITYTVGEYTASDSSVQVLYTNEEGFEHKRHVNIPKNPDGTIDEEYFAEILEGQLRGVENKLRVGAVTFTDPTPPPTPEEVEVPAEETTEPALEE
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.