NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335019_0000126

Scaffold Ga0335019_0000126


Overview

Basic Information
Taxon OID3300034066 Open in IMG/M
Scaffold IDGa0335019_0000126 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Jul2017-rr0087
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)45778
Total Scaffold Genes70 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)29 (41.43%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005089Metagenome / Metatranscriptome412Y
F021974Metagenome / Metatranscriptome216Y
F022640Metagenome / Metatranscriptome213Y
F058109Metagenome135Y
F090331Metagenome / Metatranscriptome108Y
F101032Metagenome / Metatranscriptome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0335019_0000126_11382_11645F021974GGAMRTTTETKMNTNIVSEIYSYHTDWKEGKVNQMWIEQSGDENKGYSYVAVAHNPRNGSTMEMSNPRTSYHETLNWVRGWCGTFCILPA
Ga0335019_0000126_11648_11926F101032N/AMSDFITISFGPSDDIARTGWWNCKEQFGNLNDAKQCGRRALSKLGTFGYVVIEEGEDFWEVVDELGAPSSKVSITAKRFTYTVQPAQELSFV
Ga0335019_0000126_1194_1319F090331AGCAGMSLGIAFAIYTTLVAFVSSIMIYYFKVMYPTEEAQLKEKSK
Ga0335019_0000126_12519_12659F022640N/AMRIAFLIATLALGLRFGLIAHASVNEYQESQAEKFCQINPNYCNAK
Ga0335019_0000126_13709_13864F058109N/AMLFDPMIETDFYILNGKQYQEFYTEAQKIGVTIDYFLDEFCEVEGPNVYVD
Ga0335019_0000126_14903_15190F005089GGAMNITDLFDSIKLSEQLALENYQQRNGVVDYCLPGVCNHYFAKYDLQGIRNGEVCLTCKVTKTVKGQLRYTFQIDGKRIAEKSIPAEFNLLGVFAH
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