NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335019_0000201

Scaffold Ga0335019_0000201


Overview

Basic Information
Taxon OID3300034066 Open in IMG/M
Scaffold IDGa0335019_0000201 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Jul2017-rr0087
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)38249
Total Scaffold Genes64 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)25 (39.06%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F053244Metagenome / Metatranscriptome141Y
F057377Metagenome / Metatranscriptome136N
F072275Metagenome121Y
F105029Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0335019_0000201_15779_16030F072275AGGMNPKQVAATAVMLAWVFLAISFLSGCVAVPMPPFGERVGEAGTLHIRATVRFEPRLSESQSANRNLWNALGEFQKTLPALKDK
Ga0335019_0000201_2123_2524F057377N/AMTKPLAVFSTRDLKLATILLTLGFEPENPAAPATRIRRDSGDETTVFHFLANHPTSGQQANQVMEWFRDADIFLEKNPEHPVAYILAALKNRDTLVSVVKATPRQLVFERNGKIVSISENATEADKKRFAKFL
Ga0335019_0000201_33653_33817F105029N/AMKTSEKQLYNALSYLVIFGKQLKNTLEELTFAIEKSESLLIAHNLKTSTRLKKP
Ga0335019_0000201_566_814F053244N/AMRLAITLTRTGSTWKVESLPSVPLGEQLAAFKAKQVAGELTADETLVVSLGDTLKRHICKAKPSAPAVEVEAEEESPKPKKK
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