NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0335019_0040027

Scaffold Ga0335019_0040027


Overview

Basic Information
Taxon OID3300034066 Open in IMG/M
Scaffold IDGa0335019_0040027 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Jul2017-rr0087
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3228
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (85.71%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003965Metagenome / Metatranscriptome459Y
F007263Metagenome / Metatranscriptome354Y
F009530Metagenome / Metatranscriptome316Y
F011299Metagenome / Metatranscriptome292Y
F087194Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0335019_0040027_158_349F011299AGGMMTRKDYVAVAEILKYASDKTHPAVFSKMVNDFAEMFAKDNERFDVTRFHEASGYHVPKFTSR
Ga0335019_0040027_2064_2243F003965AGGTGGMTTLTITKCAEHAPHKSSISEVQDTQFTFCETCENNIERWYDDTDPERLPMWTDWKVSN
Ga0335019_0040027_2593_2775F009530N/AMGELIMTITYSIWQGSKLISIDNVAHDVKAIDNLIKTLNDSELGKGKKFTANVQNIKVTA
Ga0335019_0040027_2951_3064F087194AGGMTLDEYKQMVEAQRLASLAIALEALSKSSAIAKEMNK
Ga0335019_0040027_869_1030F007263AGGAMNIIDKTDFYEIADEQFFCCDESQFKYYCIEHLEFMGCYFCGFDYDKDCEEQH
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.