NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334990_0000277

Scaffold Ga0334990_0000277


Overview

Basic Information
Taxon OID3300034068 Open in IMG/M
Scaffold IDGa0334990_0000277 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME13Apr2016-rr0031
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)31242
Total Scaffold Genes44 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (22.73%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (28.57%)
Associated Families7

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F047677Metagenome / Metatranscriptome149N
F066778Metagenome / Metatranscriptome126Y
F070109Metagenome / Metatranscriptome123Y
F072341Metagenome / Metatranscriptome121N
F077297Metagenome / Metatranscriptome117Y
F082692Metagenome / Metatranscriptome113Y
F093876Metagenome / Metatranscriptome106N

Sequences

Protein IDFamilyRBSSequence
Ga0334990_0000277_10884_11543F066778AGTAGMRAGAHTFKTILMSYTREPNWDKLKPSIDWDEQEEKLASKLDKYINKNKIKQTVMNQSTVKSQKFVRTWDGPSGAIHYFDLLLENGEVGQIGVKDMNSPKIAVGATLHYTAEERTGPTGKKTTNFKMQNPMQYSGPSSAQGGAVNSAVNYRKESPDVQNSISKSVALNNAVLFCKEQKGSKPGDVLDTAEIFLAWLKGESIIETKLDLTNEISNDEMPF
Ga0334990_0000277_12521_12841F070109N/ALPGKDTLVTLTTEQVRSLLKLKIERDYLKSQVVLLTKSDSIASYVISDQAKSIDEYSVLNERMAINLSAAQQERDKESARKESWRNTALIGIPISFIGGIIFTVFF
Ga0334990_0000277_12804_13160F077297N/AMTQQAKTQIKAAAVMVVALSICITIQLLYIALKDSKKAIEGYERRADRATHVIDSLEATNVQRMLEIEQLNVQLERNKERYEANISAIDSLDRNGLRRAMHNLLSSLAGERYPGNTND
Ga0334990_0000277_13132_13377F047677N/AMKWLRSIFSNEGDASSKRVASIVTLLVCINLSYIGTFTEYKCPEYMFDGLLILAGGGLGLTVIESIFGKKKSNDSTGQDSN
Ga0334990_0000277_22289_22486F082692N/AMTNPQEDIVISMTLLRAGAQGKTKTFQHAVGSHHAKLKVWQIRAINYTIVIGLLSLITLTIYSIV
Ga0334990_0000277_8121_8471F093876N/AMNLFKRKKEPIDLNAKLLPELCSCTIIQWNYSDDIGLEATYAEDIPFMFDARKCVGIQAEVEFRKDGTYYVGERTLALMQGIDNAVVIDVPYNEFKKHFQELKSNIITNDYIISRG
Ga0334990_0000277_8752_9414F072341AGAAGMSSDKLICLNEQEFRELIAQAAVVNGIKSLPSDIEVSLLKQVVLTTYMQLSIKDWQNAFLYNAIGKDFDRIDAFNLFSVAFMSDVFKRYEEYKSKVWRELNKALILPEPEIIRAEPTDPLTALHADVERWQDGKETWVEISAPYNCQRLFRQGIYKKSEWDAEVWARFDDLAKQKTEAKFKASNRVVLGPSAQEEFDGYQKIELSRLIYIDIIKKIIKQS
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